| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman | sea/bay/gulf | native | 846 |
| Andaman Sea | Sea/Bay/Gulf | native | 846 |
| Andaman Sea Coral Coast | Sea/Bay/Gulf | native | 846 |
| Arafura Sea | Sea/Bay/Gulf | native | 846 |
| Banda Sea | Sea/Bay/Gulf | native | 846 |
| Bay of Bengal | Sea/Bay/Gulf | native | 846 |
| Bismarck Sea | Sea/Bay/Gulf | native | 846 |
| Central and Southern Great Barrier Reef | Sea/Bay/Gulf | native | 846 |
| Central Indo-Pacific | sea/bay/gulf | native | 846 |
| East Caroline Islands | Sea/Bay/Gulf | native | 846 |
| Eastern Coral Triangle | sea/bay/gulf | native | 89710 |
| Eastern Indo-Pacific | sea/bay/gulf | native | 89710 |
| Eastern Philippines | Sea/Bay/Gulf | native | 846 |
| Fiji Islands | Sea/Bay/Gulf | native | 89710 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 846 |
| Gulf of Papua | Sea/Bay/Gulf | native | 846 |
| Halmahera | Sea/Bay/Gulf | native | 846 |
| Indian Ocean | Sea/Bay/Gulf | native | 846 |
| Lesser Sunda | Sea/Bay/Gulf | native | 846 |
| Line Islands | Sea/Bay/Gulf | native | 89710 |
| Malacca Strait | Sea/Bay/Gulf | native | 846 |
| Mariana Islands | Sea/Bay/Gulf | native | 101074 |
| Marshall Islands | Sea/Bay/Gulf | native | 846 |
| Marshall, Gilbert, and Ellis Islands | sea/bay/gulf | native | 846 |
| Northeast Sulawesi | Sea/Bay/Gulf | native | 846 |
| Northern Bay of Bengal | Sea/Bay/Gulf | native | 89710 |
| Ogasawara Islands | Sea/Bay/Gulf | native | 83544 |
| Pacific Ocean | Sea/Bay/Gulf | native | 846 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 846 |
| Papua | Sea/Bay/Gulf | native | 846 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 89710 |
| Solomon Sea | Sea/Bay/Gulf | native | 75728 |
| South China Sea | Sea/Bay/Gulf | native | 846 |
| South India and Sri Lanka | Sea/Bay/Gulf | native | 846 |
| Southeast Papua New Guinea | Sea/Bay/Gulf | native | 846 |
| Southern Java | Sea/Bay/Gulf | native | 846 |
| Southern Vietnam | Sea/Bay/Gulf | native | 846 |
| Sulawesi Sea/Makassar Strait | Sea/Bay/Gulf | native | 846 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 846 |
| Sunda Shelf | sea/bay/gulf | native | 846 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 846 |
| Temperate Northern Pacific | sea/bay/gulf | native | 89710 |
| Torres Strait Northern Great Barrier Reef | Sea/Bay/Gulf | native | 846 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 101074 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 89710 |
| West and South Indian Shelf | sea/bay/gulf | native | 846 |
| West Caroline Islands | Sea/Bay/Gulf | native | 101074 |
| West Philippine Sea | Sea/Bay/Gulf | native | 846 |
| Western Coral Triangle | sea/bay/gulf | native | 846 |
| Western Indo-Pacific | sea/bay/gulf | native | 89710 |