| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 846 |
| Banda Sea | Sea/Bay/Gulf | native | 846 |
| Cargados Carajos/Tromelin Island | Sea/Bay/Gulf | native | 846 |
| Central Indian Ocean Islands | sea/bay/gulf | native | 846 |
| Central Indo-Pacific | sea/bay/gulf | native | 846 |
| Eastern Coral Triangle | sea/bay/gulf | native | 89710 |
| Indian Ocean | Sea/Bay/Gulf | native | 846 |
| Indonesian Sea | Sea/Bay/Gulf | native | 846 |
| Lesser Sunda | Sea/Bay/Gulf | native | 846 |
| Maldives | Sea/Bay/Gulf | native | 846 |
| New Caledonia | Sea/Bay/Gulf | native | 100373 |
| Pacific Ocean | Sea/Bay/Gulf | native | 846 |
| Seychelles | Sea/Bay/Gulf | native | 846 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 89710 |
| South China Sea | Sea/Bay/Gulf | native | 846 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 846 |
| Sunda Shelf | sea/bay/gulf | native | 846 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 100373 |
| Verde Island Passage | Sea/Bay/Gulf | native | 910 |
| West Philippine Sea | Sea/Bay/Gulf | native | 846 |
| Western Coral Triangle | sea/bay/gulf | native | 846 |
| Western Indian Ocean | sea/bay/gulf | native | 846 |
| Western Indo-Pacific | sea/bay/gulf | native | 846 |