| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 848 |
| Arabian Sea | Sea/Bay/Gulf | native | 848 |
| Central Indian Ocean Islands | sea/bay/gulf | native | 89710 |
| Central Indo-Pacific | sea/bay/gulf | native | 89710 |
| Cocos-Keeling/Christmas Island | Sea/Bay/Gulf | native | 89710 |
| East African Coral Coast | Sea/Bay/Gulf | native | 89710 |
| Gulf of Aden | Sea/Bay/Gulf | native | 848 |
| Indian Ocean | Sea/Bay/Gulf | native | 848 |
| Java Transitional | sea/bay/gulf | native | 89710 |
| Pacific Ocean | Sea/Bay/Gulf | native | 89710 |
| Red Sea and Gulf of Aden | sea/bay/gulf | native | 848 |
| Seychelles | Sea/Bay/Gulf | native | 89710 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 848 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 89710 |
| West Caroline Islands | Sea/Bay/Gulf | native | 89710 |
| Western Indian Ocean | sea/bay/gulf | native | 89710 |
| Western Indo-Pacific | sea/bay/gulf | native | 89710 |